None
Published Workflows | brent | APOSTL_MS1_MaxQuant

Galaxy Workflow ' APOSTL_MS1_MaxQuant'

Annotation: MaxQuant
StepAnnotation
Step 1: SAINT pre-processing
MaxQuant
select at runtime
True
select at runtime
True
select at runtime
Bait Creates
Step 2: Query CRAPome
Output dataset 'Prey_file' from step 1
Human
select at runtime
Step 3: SAINTexpress
Output dataset 'Inter_file' from step 1
Output dataset 'Prey_file' from step 1
Output dataset 'Bait_file' from step 1
100
False
1
False
select at runtime
Step 4: APOSTL Static Bubblegraph Generator
Output dataset 'SAINT_output' from step 3
Output dataset 'Prey_file' from step 1
Output dataset 'CrapomeFile' from step 2
Output dataset 'Inter_file' from step 1
ln(NSAF)
ln(NSAF)
fixed
Crapome
0.8
0
0
Default
none
Black
AirForceblue Antiflashwhite
Black
AirForceblue Antiflashwhite
Step 5: APOSTL Interactive Analysis
Output dataset 'SAINT_output' from step 3
Output dataset 'Prey_file' from step 1
Output dataset 'CrapomeFile' from step 2
Output dataset 'Inter_file' from step 1
Step 6: SAINT Output to Protein Interaction File
Output dataset 'SAINT_output' from step 3
0.8
0.8
Human
Step 7: NSAF Scoring Table
Output dataset 'SAINT_output' from step 3
Output dataset 'Prey_file' from step 1
Output dataset 'CrapomeFile' from step 2
Output dataset 'Inter_file' from step 1